CAMP: Patterns / HMMs

Patterns

Family

Pattern

T. Length

Ascaphin

CAMPAscP

G-F-[KR]-D-x-[IL]-K-G-A-A-K-x-[FL]-[IV]-K-T-V-[AL]

Variable

Bacteriocin

CAMPBacP32

T-x-[GPTV]-x-[STV]-T-[CGS]-x(3)-[CST]-x(2)-[AL]-[GQ]-[NTV]-x-[GTV]-x(2)-[CS]-x(2)-[PST]

Brevinin

CAMPBreP20	K-[FLV]-[FILV]-C-[AL]-[FIV]-x-K-K-C	20
CAMPBreP29	G-[IL]-x-[DE]-x-[IL]-K-[NQ]-x-[AG]-K-x(3,5)-L-x(0,2)-L-x(2)-[AIL]-x-C-K-[ILV]-[AGS]-G-[GQ]-[CG]	29

Caerin

CAMPCaeP

A-x(0,1)-K-x(2,3)-P-[HR]-V-[AIV]-P-[AIV]-[IV]-[AT]-E-[HK]

Variable

Cecropin

CAMPCecP31	L-[ES]-K-[TV]-x-[KR]-x-[IL]-[ER]-N-[GS]-[AI]-x-[KR]-x(2)-[GS]-[EP]-[AG]-[IV]-A-[IV]-[AI]-[GI]-x-[AG]	31
CAMPCecP35	K-[ILV]-x-K-K-I-E-x(2)-G-x(0,1)-R-[NV]-[FIV]-[KR]-[ADN]-[AG]-x(3)-[AL]-[AGP]-[PV]-[AV]-[AIV]-[AEG]-V-x-[AG]-x-[AG]	35
CAMPCecP37	W-x-[LPV]-F-K-x(0,2)-E-x(2)-G-[QR]-[NR]-[IV]-R-[DN]-[AG]-[IV]-[IV]-x-A-[AG]-[AP]-[AV]-[AIV]-[AET]-[TV]-[GLV]-[GQ]-[AEQS]-A-x(2)-[AIL]	37

Clavanin

CAMPClaP

F-x(0,1)-L-x(2,3)-I-[GI]-x(2)-[IV]-x-[GN]-[FI]-[GV]-[HY]-[GL]-[FV]-x-H-[IV]

Variable

Coleoptericin

CAMPColP

G-x(0,1)-N-T-x-[AGT]-[DQT]-I-[DEN]-[AIV]-Q-x-[HK]-[GT]-[DEK]-[DNR]-x-D-[FV]-x-[AG]-[GT]-W-[GST]-K-V-[IV]-[DR]-G-P-[GN]-[KR]-[AS]-K-P-[NT]-[FW]-x-[IV]-G-G-[ST]-[HY]-R

Variable

Cupiennin

CAMPCupP

G-F-G-[AS]-L-F-K-F-L-A-K-K-V-A-K-T-V-A-K-Q-A-A-K-Q-G-A-K-Y-[IV]-[AV]-N-K-x(2)-[EQ]

Variable

Cystatin

CAMPCysP

T-[FH]-[IL]-S-x(0,2)-E-x-[IM]-[AI]-[DV]-x-N-x-[AI]

Variable

Defensin

CAMPDefP30

C-x(4)-C-x(4)-R-[QR]-x-G-T-C-[FIL]

Dermaseptin

CAMPDerP25	G-L-x-S-x-I-K-x(3)-K-x-A-x(2,3)-A-x-G	25
CAMPDerP28	K-[DNST]-[ILMV]-[GL]-K-[EGN]-[AIV]-[AG]-x-[AL]-A-G-x-A-[AV]-L-[GN]-[AST]-[LV]-x-[DET]	28
CAMPDerP30	L-[FW]-K-[NT]-[ILM]-[IL]-K-G-[AI]-G-K-[LMV]-x-G-x(1,2)-A-x(1,3)-L-G-[AS]-x(3)-[LP]-x-[GS]	30

Esculentin

CAMPEscP37

K-x(2)-[AGT]-[KR]-x-G-x(3)-[ILMV]-[AGS]-C-K-[AIV]-x(2)-[EQ]-C

Formaecin

CAMPForP

G-R-P-N-P-V-N-[NT]-K-P-T-P-[HY]-P-R-L

Variable

Halocidin

CAMPHalP

A-L-L-H-H-G-L-N-C-A-K-G-V-L-A

Variable

Histatin

CAMPHisP

K-F-H-E-K-H-H-S-H-R-[EG]-[FY]

Variable

LEAP-2

CAMPLEAP

M-T-P-F-W-R-G-V-S-L-R-P-[IV]-G-A-S-C-R-D-[DN]-S-E-C-I-T-x-L-C-R-K-x(0,1)-R-x(0,1)-C-x-L-[RS]-[TV]-A-[QS]-E

Variable

Maximin

CAMPMaxP27

I-G-x(3)-L-[GS]-[AGV]-[GLV]-[KR]-x(2)-[FL]-K-G-[AL]-x(3)-L-A-x(2)-[FY]-[ALV]

Metchnikowin

CAMPMetP

R-[HR]-Q-G-P-I-F-D-T-R-P-S-P-F-N-P-N-Q-P-R-P-G-P-I-Y

Variable

Moricin

CAMPMorP

K-x-[GNP]-[AGIV]-x-[AI]-I-K-x(1,2)-G-x(1,3)-G-x-[AGILV]-x(2)-[AGIV]-[GI]-[NST]-[AGI]-x-[EGQS]-[TV]-x(2)-[DH]-[IV]-x-[ENS]

Variable

Myticin

CAMPMytP

C-T-S-Y-[WY]-C-[GS]-K-F-C-G-[ST]-A-[GS]-C-[ST]-x-Y-[GL]-C-x(2)-L-H-x-G-K-[ILM]-C-x-C-[LV]-H-C-S-R

Variable

Penaeidin

CAMPPenP

G-[HY]-T-x-P-x(1,3)-P-x(0,1)-R-P-[ILP]-x(4)-[IP]-[GILP]-x(3)-[CPV]-x-[CGNT]

Variable

Phylloseptin

CAMPPhyP

L-[GS]-[LM]-[IL]-P-x(1,2)-I-x(1,3)-S-[AGT]-[AILV]-[ASV]

Variable

Plantazolicin

CAMPPlaP

C-T-C-T-T-I-I-S-S-S-S-T-F

Variable

Pseudin

CAMPPseP

G-[IL]-N-[AT]-L-K-K-V-[FI]-Q-G-[IL]-H-E-[AV]-I-K-L-[IV]-[NS]-N-H

Variable

Ranateurin

CAMPRanP28	D-[ASTV]-x-K-[DGN]-x-A-x-[DNT]-[ILV]-x-[AGV]-x(2)-L-[DEN]-x-[IL]-[KR]-C-[KR]-[FIMV]-[ST]-x-C	28
CAMPRanP32	K-x(0,1)-G-x(0,2)-K-[DNT]-[FLV]-A-[AGV]-x-[LM]-L-[DE]-x-[FIL]-K-C-x-[IM]-[GT]-[GT]-C	32