STEP 1 - Submit PROTEIN sequences [help]

Submit PROTEIN sequences (max. 10) Examples
Submit a PROTEIN database (max. 16MB) for repeated scans (The data will be stored on our server for 1 month).

STEP 2 - Select options [help]

Exclude motifs with a high probability of occurrence from the scan
Exclude profiles from the scan
Run the scan at high sensitivity (show weak matches for profiles)

STEP 1 - Enter a MOTIF or a combination of MOTIFS Examples [help]


Supported input:

• A PROSITE accession e.g. PS50240 or identifier e.g. TRYPSIN_DOM
• Your own pattern e.g. P-x(2)-G-E-S-G(2)-[AS]
• A combination of PROSITE accessions/identifiers e.g. PS50240 and PS50068, e.g. PS50240 and not ( PS00134 or PS00135 )
• A combination of PROSITE accessions/identifiers and your own pattern e.g. PS50240 and P-x(2)-G-E-S-G(2)-[AS]

      » More

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» Options [help]

STEP2 - Select a PROTEIN sequence database [help]

UniProtKB
      Swiss-Prot Include splice variants
      TrEMBL
PDB
Your protein database
       If you already have a code for your database, enter the code:
       Otherwise, upload your database as a FASTA file to obtain a code
Randomized UniProtKB/Swiss-Prot [help]
      reversed
      window20

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Exclude fragments (concerns UniProtKB only)
» Filters [help]

On length >= than:
On length <= than:
On taxonomy:   any taxonomical term e.g. Homo sapiens, e.g. Fungi; Arthropoda or corresponding TaxID e.g. 9606, e.g. 4751; 6656
On description: e.g. protease
On Tissue expression (Bgee data): Any (no filtering) adrenal gland - interrenal gland alimentary system artery blood bone brain cartilage central nervous system cerebellum ciliary body dermis diencephalon dorsal root ganglion endocrine system epidermis eye gall bladder gut heart heart endocardium heart myocardium hematopoietic system hindbrain hypophysis inner ear intestine iris joint lens liver lung medulla oblongata midbrain muscle oesophagus olfactory organ optic II nerve oral cavity ovary pancreas peripheral nervous system peritoneum pharyngeal arch 1 pineal gland renal system reproductive system respiratory system retina skin spinal cord spleen swim bladder testis thymus thyroid vein whole organism
(only on Human, Xenopus, Mouse and Zebrafish; adult stage)
N.B. Does not consider splice variants of UniProtKB/Swiss-Prot.

STEP 1 - Submit PROTEIN sequences [help]

Submit PROTEIN sequences (max. 1'000) Examples
Submit a PROTEIN database (max. 16MB) for repeated scans (The data will be stored on our server for 1 month).

STEP 2 - Enter a MOTIF or a combination of MOTIFS Examples [help]


Supported input:

• A PROSITE accession e.g. PS50240 or identifier e.g. TRYPSIN_DOM
• Your own pattern e.g. P-x(2)-G-E-S-G(2)-[AS]
• A combination of PROSITE accessions/identifiers e.g. PS50240 and PS50068, e.g. PS50240 and not ( PS00134 or PS00135 )
• A combination of PROSITE accessions/identifiers and your own pattern e.g. PS50240 and P-x(2)-G-E-S-G(2)-[AS]

» More

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» Options [help]