Dermaseptin

Dermaseptin proteins are used in eukaryotes as an antimicrobial agent. Dermaseptins are typically between 30 to 76 amino acids in length. This domain is found associated with PF03032. The full-length protein is almost completely defined in an alpha helical domain. It creates high levels of disorder at the level of the phospholipid head group of bacterial membranes suggesting that it partitions into the bilayer where it severely disrupts membrane packing. The polypeptide precursor to the dermaseptins consist of a tripartite organisation: a N-terminal signal peptide, followed by an acidic region terminated by two basic Lys-Arg residues and the actual dermaseptin at the C terminus.

The below sequences were used to create Dermaseptin sequence signatures:

>CAMPSQ327
GLVTSLIKGAGKLLGGLFGSVTGGQS
>CAMPSQ2961
GLVTSLIKGAGKLLGGLFGSVTG
>CAMPSQ850
ALWKTIIKGAGKMIGSLAKNLLGSQAQPES
>CAMPSQ2962
ALWKTLLKGAGKVFGHVAKQFLGSQGQPES
>CAMPSQ3945
GLFKTLIKGAGKMLGHVAKQFLGSQGQPES
>CAMPSQ2878
GLRSKIWLWVLLMIWQESNKFKKM
>CAMPSQ328
FLSLIPHIVSGVAALAKHL
>CAMPSQ141
GWMSKIASGIGTFLSGMQQ
>CAMPSQ194
AMWKDVLKKIGTVALHAGKAALGAVADTISQ
>CAMPSQ3879
ALWKDVLKKIGTVALHAGKAALGAVADTISQ
>CAMPSQ465
ALWFTMLKKLGTMALHAGKAALGAAANTISQGTQ
>CAMPSQ2959
ALWKTMLKKLGTVALHAGKAALGAAADTISQ
>CAMPSQ332
ALWKTMLKKLGTMALHAGKAALGAAADTISQGTQ
>CAMPSQ420
ALWKTMLKKLGTMALHAGKAAFGAAADTISQ
>CAMPSQ36, CAMPSQ1060, CAMPSQ3184
GLWSTIKNVGKEAAIAAGKAALGAL
>CAMPSQ3184
GLWSTIKNVGKEAAIAAGKAALGALGEQ
>CAMPSQ1059
GLWSTIKNVGKEAAIAAGKAVLGSL
>CAMPSQ3185
GLWSTIKNVGKEAAIAAGKAVLGSLGEQ
>CAMPSQ3326
GMWSKIKNAGKAAKAAAKAAGKAALGAVSEAM
>CAMPSQ538
GLWSKIKEVGKEAAKAAAKAAGKAALGAVSEAV
>CAMPSQ986
GLWSTIKQKGKEAAIAAAKAAGQAALGAL
>CAMPSQ4507
GLWSKIKETGKEAAKAAGKAALNKIAEAV
>CAMPSQ418
GLWSKIKAAGKEAAKAAAKAAGKAALNAVSEAV
>CAMPSQ468
GLWSKIKTAGKSVAKAAAKAAVKAVTNAV
>CAMPSQ2957
GLWSKIKTAGKEAAKAAAKAAGKAALNAVSEAI
>CAMPSQ3944
DLWNSIKDMAAAAGRAALNAVTGMVNQ
>CAMPSQ2968
GLWSKIKEAAKAAGKAALNAVTGLVNQGDQPS
>CAMPSQ389
GLWNKIKEAASKAAGKAALGFVNEMV
>CAMPSQ2964
GLRSKIKEAAKTAGKMALGFVNDMA
>CAMPSQ3946
GLWSKIKEAAKTAGKAAMGFVNEMV
>CAMPSQ422
GLWSKIKEAAKTAGLMAMGFVNDMV
>CAMPSQ2963
GLWSKIKEAAKTAGKMAMGFVNDMV
>CAMPSQ467
ALWMTLLKKVLKAAAKALNAVLVGANA
>CAMPSQ466
ALWKNMLKGIGKLAGKAALGAVKKLVGAES
>CAMPSQ139, CAMPSQ4509
ALWKNMLKGIGKLAGQAALGAVKTLVGA
>CAMPSQ421
ALWKNMLKGIGKLAGQAALGAVKTLVGAES
>CAMPSQ3951
ALWKDILKNAGKAALNEINQIVQ
>CAMPSQ140, CAMPSQ4508
ALWKDILKNVGKAAGKAVLNTVTDMVNQ
>CAMPSQ419
ALWKTLLKNVGKAAGKAALNAVTDMVNQ
>CAMPSQ2958
GLWKSLLKNVGKAAGKAALNAVTDMVNQ
>CAMPSQ2965
ALWKSLLKNVGVAAGKAALNAVTDMVNQ
>CAMPSQ838
GLLSFLPKVIGVIGHLIHPPS
>CAMPSQ138
SLGSFLKGVGTTLASVGKVVSDQFGKLLQAGQ
>CAMPSQ3880
SLRGFLKGVGTALAGVGKVVADQFDKLLQAGQ

The below sequences were retrieved using Dermaseptin sequence signatures:

> CAMPDerP25, CAMPDerH, CAMPDerH25 | CAMPSQ36 | P84596 | 114149278
GLWSTIKNVGKEAAIAAGKAALGAL
> CAMPDerP28, CAMPDerH, CAMPDerP30, CAMPDerH28 | CAMPSQ139 | P81485 | 13959342
ALWKNMLKGIGKLAGQAALGAVKTLVGA
> CAMPDerP28, CAMPDerH, CAMPDerH25 | CAMPSQ140 | P81486 | 13959343
ALWKDILKNVGKAAGKAVLNTVTDMVNQ
> CAMPDerH | CAMPSQ194 | P80282 | 1706455
AMWKDVLKKIGTVALHAGKAALGAVADTISQ
> CAMPDerH | CAMPSQ332 | P24302 | 29337160, 740957
ALWKTMLKKLGTMALHAGKAALGAAADTISQGTQ
> CAMPDerH, CAMPDerH25 | CAMPSQ389 | P81487 | 3913493
GLWNKIKEAASKAAGKAALGFVNEMV
> CAMPDerH, CAMPDerH25 | CAMPSQ418 | P83638 | 41016984
GLWSKIKAAGKEAAKAAAKAAGKAALNAVSEAV
> CAMPDerP28, CAMPDerH, CAMPDerH25 | CAMPSQ419 | P83639 | 41016985
ALWKTLLKNVGKAAGKAALNAVTDMVNQ
> CAMPDerH | CAMPSQ420 | P83640 | 41016986
ALWKTMLKKLGTMALHAGKAAFGAAADTISQ
> CAMPDerP28, CAMPDerH, CAMPDerP30, CAMPDerH28 | CAMPSQ421 | P83641 | 41016987
ALWKNMLKGIGKLAGQAALGAVKTLVGAES
> CAMPDerP25, CAMPDerH, CAMPDerH25 | CAMPSQ422 | P83642 | 41016988
GLWSKIKEAAKTAGLMAMGFVNDMV
> CAMPDerH | CAMPSQ465 | P80278 | 461936, 740958
ALWFTMLKKLGTMALHAGKAALGAAANTISQGTQ
> CAMPDerP30, CAMPDerH28, CAMPDerH | CAMPSQ466 | P80279 | 461937, 740959
ALWKNMLKGIGKLAGKAALGAVKKLVGAES
> CAMPDerH25, CAMPDerH | CAMPSQ468 | P80281 | 461939, 740961
GLWSKIKTAGKSVAKAAAKAAVKAVTNAV
> CAMPDerH, CAMPDerH25 | CAMPSQ538 | P31107 | 585056, 260423
GLWSKIKEVGKEAAKAAAKAAGKAALGAVSEAV
> CAMPDerP30, CAMPDerH30 | CAMPSQ850 | P81488 | 29337224
ALWKTIIKGAGKMIGSLAKNLLGSQAQPES
> CAMPDerH, CAMPDerH25 | CAMPSQ986 | P83637 | 41016983
GLWSTIKQKGKEAAIAAAKAAGQAALGAL
> CAMPDerP25, CAMPDerH, CAMPDerP28, CAMPDerH25 | CAMPSQ1059 | Q1EJP4 | 114149285
GLWSTIKNVGKEAAIAAGKAVLGSL
> CAMPDerP25, CAMPDerH, CAMPDerP28, CAMPDerH25 | CAMPSQ1060 | Q1EJP5 | 114149283
GLWSTIKNVGKEAAIAAGKAALGAL
> CAMPDerH | CAMPSQ1194 | Q800S0 | 29123258
SVLSTITDMAKAAGRAALNAITGLVNQGEQ
> CAMPDerH, CAMPDerH25 | CAMPSQ1229 | P84937 | 115502150
GLWSKIKDVAAAAGKAALGAVNEALGEQ
> CAMPDerH, CAMPDerH25 | CAMPSQ1230 | P84936 | 115502149
GLWSTIKQKGKEAAIAAAKAAGQAALGAL
> CAMPDerH | CAMPSQ1235 | P80282 | 505484, 743626
DVLKKIGTVALHAGKAALGAVADTISQ
> CAMPDerP25, CAMPDerH, CAMPDerH25 | CAMPSQ1333 | Q1EN11 | 106880060
DEEKRENEDEENQEDDEQSEMRRGLRSKIKEAAKTAGKMALGFVNDMAGEQ
> CAMPDerP25, CAMPDerH, CAMPDerH25 | CAMPSQ1334 | Q1EN12 | 106880058
EEEKRENEDEENQEDDEQSEMRRGLWSKIKEAAKTAGKMAMGFVNDMVGEQ
> CAMPDerP30, CAMPDerH30 | CAMPSQ1335 | Q1EN13 | 106880056
EEEKRENEDEEEQEDDEQSEEKRALWKTLLKGAGKVFGHVAKQFLGSQGQPES
> CAMPDerH, CAMPDerH25 | CAMPSQ1521 | O93452 | 13959337
ALWKTLLKKVGKVAGKAVLNAVTNMANQNEQ
> CAMPDerH, CAMPDerH25 | CAMPSQ1522 | O93223 | 13959332
SLWSKIKEMAATAGKAALNAVTGMVNQ
> CAMPDerH, CAMPDerH25 | CAMPSQ1523 | O93453 | 13959338
GMWSKIKNAGKAAAKASKKAAGKAALGAVSEAL
> CAMPDerH28 | CAMPSQ1524 | O93224 | 13959333
GMFTNMLKGIGKLAGQAALGAVKTLA
> CAMPDerH, CAMPDerH25 | CAMPSQ1528 | O93226 | 13959335
GMWSTIRNVGKSAAKAANLPAKAALGAISEAV
> CAMPDerH | CAMPSQ1529 | P81490 | 29337225
ALWKDILKNAGKAALNEINQLVNQ
> CAMPDerH, CAMPDerH25 | CAMPSQ1737 | Q17UY8 | 114149281
GLWSTIKNVAAAAGKAALGAL
> CAMPDerH, CAMPDerH25 | CAMPSQ1818 | P84880 | 114149287
GLWSTIKQKGKEAAIAAAKAAGQAALNAASEAL
> CAMPDerP25, CAMPDerH, CAMPDerH25 | CAMPSQ1820 | Q90ZK5 | 29336873
RGLWSKIKEAGKAALTAAGKAALGAVSDAV
> CAMPDerH, CAMPDerH25 | CAMPSQ1821 | Q90ZK3 | 29336872
GLWSNIKTAGKEAAKAALKAAGKAALGAVTDAV
> CAMPDerH, CAMPDerH25 | CAMPSQ1823 | P84601 | 114149286
GLWSTIKQKGKEAAIAAAKAAGQAVLNSASEAL
> CAMPDerH, CAMPDerH25 | CAMPSQ1824 | P84599 | 114149282
GLWSTIKQKGKEAAIAAAKAAGKAVLNAASEAL
> CAMPDerH | CAMPSQ1825 | P84598 | 114149280
ALWKDVLKKIGTVALHAGKAAFGAAADTISQGGS
> CAMPDerP28, CAMPDerH, CAMPDerH25 | CAMPSQ1826 | P84597 | 114149279
GLWKSLLKNVGVAAGKAALNAVTDMVNQ
> CAMPDerH, CAMPDerH25 | CAMPSQ1885 | P84600 | 114149284
GLWSTIKQKGKEAAIAAAKAAGQAALGAL
> CAMPDerH, CAMPDerH25 | CAMPSQ2589 | P85523 | 292630691
LWKDLLKNVGIAAGKAVLNKVTDMVNQ
> CAMPDerH | CAMPSQ3879 | P84927 |
ALWKDVLKKIGTVALHAGKAALGAVADTISQ
> CAMPDerH, CAMPDerH25 | CAMPSQ3944 | P83914 |
DLWNSIKDMAAAAGRAALNAVTGMVNQ
> CAMPDerP30, CAMPDerH30 | CAMPSQ3945 | P84923 |
GLFKTLIKGAGKMLGHVAKQFLGSQGQPES
> CAMPDerP25, CAMPDerH, CAMPDerH25 | CAMPSQ3946 | P84925 |
GLWSKIKEAAKTAGKAAMGFVNEMV
> CAMPDerH | CAMPSQ3951 | P84924 |
ALWKDILKNAGKAALNEINQIVQ
> CAMPDerH30 | CAMPSQ4379 | P86642 |
ALWKSLLKGAGQLVGGVVQHFMGSQGQPES
> CAMPDerH, CAMPDerH28 | CAMPSQ4380 | P86635 |
GLWKNMLSGIGKLAGQAALGAVKTLV
> CAMPDerH, CAMPDerH28 | CAMPSQ4381 | P86636 |
GLWKNMLSGIGKLAGEAALGAVKTLV
> CAMPDerH, CAMPDerH28 | CAMPSQ4382 | P86637 |
ALWKNMLSGIGKLAGQAALGAVKTLV
> CAMPDerH, CAMPDerH28 | CAMPSQ4383 | P86281 |
ALWKNMLKGIGKLAGKAALGAVK
> CAMPDerH, CAMPDerH28 | CAMPSQ4384 | P86638 |
ALWKDMLSGIGKLAGQAALGAVKTLV
> CAMPDerP28, CAMPDerH, CAMPDerP30, CAMPDerH28 | CAMPSQ4385 | P86279 |
ALWKNMLKGIGKLAGQAALGAVKTLVGA
> CAMPDerP25, CAMPDerH, CAMPDerH25 | CAMPSQ4386 | P86683 |
GLWSKIKEAGKAAVKAAGKAALGAVANSV
> CAMPDerP25, CAMPDerH, CAMPDerH25 | CAMPSQ4387 | P86684 |
GLWSKIKEAGKAAVKAAGKAALGAVADSV
> CAMPDerH, CAMPDerH25 | CAMPSQ4388 | P86639 |
GLWSKIKAAGKEAAKAAAKAAGKAALNAVSEAV
> CAMPDerP28, CAMPDerH, CAMPDerH25 | CAMPSQ4389 | P86640 |
GLWKSLLKNVGKAAGKAALNAVTDMVNQA
> CAMPDerH | CAMPSQ4390 | P86280 |
ALWKTMLKKLGTVALHAGKAALGAAADTISQGA
> CAMPDerP28, CAMPDerH, CAMPDerH25 | CAMPSQ4391 | P86641 |
GLWKSLLKNVGKAAGKAALNAVTDMVNQS
> CAMPDerP25, CAMPDerH, CAMPDerH25 | CAMPSQ4507 | P84921 |
GLWSKIKETGKEAAKAAGKAALNKIAEAV
> CAMPDerP28, CAMPDerH, CAMPDerH28 | CAMPSQ4508 | P84922 |
ALWKDILKNVGKAAGKAVLNTVTDMVNQ
> CAMPDerP28, CAMPDerH, CAMPDerP30, CAMPDerH28 | CAMPSQ4509 | P84926 |
ALWKNMLKGIGKLAGQAALGAVKTLVGA
> CAMPDerH25 | CAMPSQ5181 | B6HY15 | 212287249
MAFLKKSLLLVLFLGLVSLSICEEEKRENEDEEEQEDDEQSEMKRGMWSKIKEAGKAAAK
AAAKAAGKAALDVVSGAIGEQ
> CAMPDerH | CAMPSQ5182 | B6HY16 | 212287247
MAFLNKSLLLVLFLGLVSLSICEEERRENEDEEEQEDDEQSEMRRSLLSTLGNMAKAAGR
AALNAITGLVNQGEQ
> CAMPDerP25, CAMPDerH, CAMPDerP28, CAMPDerH25 | CAMPSQ6183 | J7H8J4 | 401022257
MAFLKKSIFLALFLGMVSLSICEEEKRENEGEEEQEDDEQSEMKRGLWSTIKNVGKEAAI
AAGKAALGALGEQ
> CAMPDerH | CAMPSQ6193 | J9V799 | 404551436
MAFLKKSLFLVLFLGLVSLSICEEEKRENEDEEKQDDEQSEMKRAMWKDVLKKIGTVALH
AGKAALGAVADTISQGEQ
> CAMPDerH | CAMPSQ6194 | J9V7S0 | 404551438
MAFLKKSLFLVLFLGLVSLSVCEEEKRENEDEMEQEDDEQSEMKRALWKDILKNAGKAAL
NEINQLVNQGE
> CAMPDerP28, CAMPDerH, CAMPDerH25 | CAMPSQ6490 | Q0VZ36 | 110836690
MDILKKSLFIVLFLGLVSLSICEEEKRENEDEEEQEDDEQSEEKRALWKSLLKNVGVAAG
KAALNAVTDMVNQGEQ
> CAMPDerP28, CAMPDerH, CAMPDerH25 | CAMPSQ6491 | Q0VZ37 | 110836688
MDILKKSLFIVLFLGLVSLSICEEEKRENEDEEEQEDDEQSEEKRGLWKSLLKNVGVAAG
KAALNAVTDMVNQGEQ
> CAMPDerH | CAMPSQ6742 | Q7T3K6 | 31414407
MDILKKSLFLVLFLGLVSLSICEEEKRENEDEEKQEDDEQSEMKRALWKTMLKKLGTMAL
HAGKAALGAAADTISQGTQ
> CAMPDerH | CAMPSQ6743 | Q7T3K7 | 31414405
MDILKKSLFLVLFLGLVSLSICEEEKRENEDEEKQEDDEQSEMKRALWKTMLKKLGTVAL
HAGKAALGAAADTISQGAQ
> CAMPDerP28, CAMPDerH, CAMPDerH25 | CAMPSQ6744 | Q7T3K8 | 31414403
MDILKKSLFLVLFLGLISLSFCEEEKRENEDEEEQEDDEQSEEKRGLWKSLLKNVGKAAG
KAALNAVTDMVNQGEQ
> CAMPDerH, CAMPDerH25 | CAMPSQ6745 | Q7T3K9 | 31414401
MDILKKSLFFILFLGLVSLSISEEEKRENEDEEDQEDDEQSEEKRGLWSKIKTAGKEAAK
AAAKAAGKAALNAVSEAIGEQ
2015, © Biomedical Informatics Centre, NIRRH, Mumbai