Dermaseptin

Description
Dermaseptin proteins are used in eukaryotes as an antimicrobial agent. Dermaseptins are typically between 30 to 76 amino acids in length. This domain is found associated with PF03032. The full-length protein is almost completely defined in an alpha helical domain. It creates high levels of disorder at the level of the phospholipid head group of bacterial membranes suggesting that it partitions into the bilayer where it severely disrupts membrane packing. The polypeptide precursor to the dermaseptins consist of a tripartite organisation: a N-terminal signal peptide, followed by an acidic region terminated by two basic Lys-Arg residues and the actual dermaseptin at the C terminus.
Pfam
Interpro
Sequences retrieved from pattern (3)
CAMPDerP25 G-L-x-S-x-I-K-x(3)-K-x-A-x(2,3)-A-x-G T. Length25
  UniProt Name
  P84596 Dermaseptin-1, DShypo 01
  P83642 Dermadistinctin-Q2
  Q1EJP4 Dermaseptin-H5
  Q1EJP5 Dermaseptin-H4
  Q1EN11 Dermaseptin S13
CAMPDerP28 K-[DNST]-[ILMV]-[GL]-K-[EGN]-[AIV]-[AG]-x-[AL]-A-G-x-A-[AV]-L-[GN]-[AST]-[LV]-x-[DET] T. Length28
  UniProt Name
  P81485 Dermaseptin-B3
  P81486 Dermaseptin-B4
  P83639 Dermadistinctin-L
  P83641 Dermadistinctin-Q1
  Q1EJP4 Dermaseptin-H5
CAMPDerP30 L-[FW]-K-[NT]-[ILM]-[IL]-K-G-[AI]-G-K-[LMV]-x-G-x(1,2)-A-x(1,3)-L-G-[AS]-x(3)-[LP]-x-[GS] T. Length30
  UniProt Name
  P81485 Dermaseptin-B3
  P83641 Dermadistinctin-Q1
  P80279 Dermaseptin-3
  P81488 Dermaseptin-3
  Q1EN13 Dermaseptin S11
Sequences retrieved from HMM ( 4 )
CAMPDerH  
  GI UniProt Name
  114149278 P84596 Dermaseptin-1, DShypo 01
  13959342 P81485 Dermaseptin-B3
  13959343 P81486 Dermaseptin-B4
  1706455 P80282 Dermaseptin B2
  29337160, 740957 P24302 Dermaseptin-1
CAMPDerH25 T. Length25
  GI UniProt Name
  114149278 P84596 Dermaseptin-1, DShypo 01
  13959343 P81486 Dermaseptin-B4
  3913493 P81487 Dermaseptin-B5
  41016984 P83638 Dermadistinctin-K
  41016985 P83639 Dermadistinctin-L
CAMPDerH28 T. Length28
  GI UniProt Name
  13959342 P81485 Dermaseptin-B3
  41016987 P83641 Dermadistinctin-Q1
  461937, 740959 P80279 Dermaseptin-3
  13959333 O93224 Dermaseptin AA-3-3
  P86635 Dermaseptin-J1
CAMPDerH30 T. Length30
  GI UniProt Name
  29337224 P81488 Dermaseptin-3
  106880056 Q1EN13 Dermaseptin S11
  P84923 Dermaseptin-3
  P86642 Dermaseptin-J10
 

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